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Species belonging to selected taxon:
Physcomitrella patens
ABOUT THIS RECORD
ID:
MNEST006994
species:
Physcomitrella patens
miRNA family:
MIR1053
source:
miRNEST
Taxonomy by NCBI:
Physcomitrella patens
Physcomitrella
Funariaceae
Funariales
Funariidae
Bryopsida
Moss Superclass V
Bryophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GATGGGTTATCTCAAAGTGGA
miRNA*
TACTTTGACATAGCCCACTTC
mismatches:
2
bulges:
0
View larger
pre-miRNA
CCAGCCTGTGA
GATGGGTTATCTCAAAGTGGA
CTTTCTCTCTGTCTTGGCTTGAACTC
TACTTTGACATAGCCCACTTC
AAAGGTAA
dot-bracket secondary structure
...((((.(((
(.((((((((.((((((((((
..(((.....((....))..))).))
)))))))).)))))))).)))
).))))..
SIMILARITIES
miRBase
ppt-MIR1053
:
3e-44
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
Identical with:
ppt-MIR1053
from miRBase (
MNEST039643
)
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
degradome data
download this record